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configure & compiler warning cleanup

Alan Coopersmith requested to merge alanc/xf86-video-mga:warnings into master
  • Use LT_INIT from libtool 2 instead of deprecated AC_PROG_LIBTOOL
  • Add X.Org's standard C warning flags to AM_CFLAGS
  • Fix 3 -Wmissing-prototypes warnings
  • Fix warning: declaration of ‘ulIndex’ shadows a previous local [-Wshadow]

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