Issues rendering gtk4 windows on VirtualBox with 3D acceleration on Fedora-40/mesa-24.0.5

Similar to #10901 , there are all kinds of rendering issues when booting Fedora 40 Workstation (GNOME) on VirtualBox with 3D acceleration enabled. Unlike the VMware case, mesa 24.0.5 does not seem to fix this.

The 'welcome' window that should be shown when the live image boots is one affected app - its main window is completely invisible, you can only tell it's there at all because the overview shows an icon, window title and close button for it. The file manager (Nautilus) shows just a grey rectangle and a white rectangle, nothing else. The calendar, just a blank white rectangle. Pretty similar results for any GTK 4 app. GTK 3 apps are OK (they do not use the new renderer GTK 4 is using).

inxi -GSC -xx output:

System:
  Host: localhost-live Kernel: 6.8.4-300.fc40.x86_64 arch: x86_64 bits: 64
    compiler: gcc v: 2.41-34.fc40
  Desktop: GNOME v: 46.0 tk: GTK v: 3.24.41 wm: gnome-shell dm: GDM
    Distro: Fedora Linux 40 (Workstation Edition)
CPU:
  Info: dual core model: Intel Core i5-9400T bits: 64 type: MCP
    arch: Coffee Lake rev: A cache: L1: 128 KiB L2: 512 KiB L3: 18 MiB
  Speed (MHz): avg: 1800 min/max: N/A cores: 1: 1800 2: 1800 bogomips: 7200
  Flags: avx avx2 ht lm nx pae sse sse2 sse3 sse4_1 sse4_2 ssse3
Graphics:
  Device-1: VMware SVGA II Adapter driver: vmwgfx v: 2.20.0.0 ports:
    active: Virtual-1 empty: Virtual-2, Virtual-3, Virtual-4, Virtual-5,
    Virtual-6, Virtual-7, Virtual-8 bus-ID: 00:02.0 chip-ID: 15ad:0405
  Display: wayland server: X.Org v: 23.2.4 with: Xwayland v: 23.2.4
    compositor: gnome-shell driver: dri: vmwgfx gpu: vmwgfx display-ID: :0
    screens: 1
  Screen-1: 0 s-res: 800x600 s-dpi: 96
  Monitor-1: Virtual-1 res: 800x600 size: N/A
  API: EGL v: 1.5 platforms: device: 0 egl: 1.4 drv: vmwgfx device: 1
    drv: swrast gbm: egl: 1.4 drv: vmwgfx surfaceless: egl: 1.4 drv: vmwgfx
    wayland: egl: 1.4 drv: vmwgfx x11: egl: 1.4 drv: vmwgfx
  API: OpenGL v: 4.5 compat-v: 4.1 vendor: vmware mesa v: 24.0.5 glx-v: 1.4
    direct-render: yes renderer: SVGA3D; build: RELEASE; LLVM;
    device-ID: 15ad:0405

GDK_DEBUG=opengl nautilus output (requested by GTK devs in downstream bug, figured it might be useful here too):

** Message: 15:01:36.241: Connecting to org.freedesktop.Tracker3.Miner.Files
EGL API version 1.4 found
 - Vendor: Mesa Project
 - Version: 1.4
 - Device: /dev/dri/renderD128, 226 128
 - Client APIs: OpenGL OpenGL_ES 
 - Extensions:
	EGL_ANDROID_blob_cache
	EGL_ANDROID_native_fence_sync
	EGL_EXT_buffer_age
	EGL_EXT_image_dma_buf_import
	EGL_EXT_image_dma_buf_import_modifiers
	EGL_EXT_pixel_format_float
	EGL_EXT_present_opaque
	EGL_EXT_swap_buffers_with_damage
	EGL_KHR_cl_event2
	EGL_KHR_config_attribs
	EGL_KHR_context_flush_control
	EGL_KHR_create_context
	EGL_KHR_create_context_no_error
	EGL_KHR_fence_sync
	EGL_KHR_get_all_proc_addresses
	EGL_KHR_gl_colorspace
	EGL_KHR_gl_renderbuffer_image
	EGL_KHR_gl_texture_2D_image
	EGL_KHR_gl_texture_3D_image
	EGL_KHR_gl_texture_cubemap_image
	EGL_KHR_image_base
	EGL_KHR_no_config_context
	EGL_KHR_reusable_sync
	EGL_KHR_surfaceless_context
	EGL_KHR_swap_buffers_with_damage
	EGL_KHR_wait_sync
	EGL_MESA_configless_context
	EGL_MESA_drm_image
	EGL_MESA_gl_interop
	EGL_MESA_image_dma_buf_export
	EGL_MESA_query_driver
	EGL_WL_bind_wayland_display
	EGL_WL_create_wayland_buffer_from_image
 - Selected fbconfig: R8G8B8A8, depth 0, stencil 0
          high depth: none
Creating EGL context version 2.0 (debug:no, forward:no, legacy:no, es:yes)
Created EGL context[0x55fe17b603e0]
Using OpenGL backend EGL
OpenGL ES version: 3.0 (core)
* GLSL version: OpenGL ES GLSL ES 3.00
* Max texture size: 16384

Enabled features (use GDK_GL_DISABLE env var to disable):
    debug: YES
    unpack-subimage: YES
    half-float: YES
    sync: YES
    base-instance: YES
    buffer-storage: not supported
Creating EGL context version 3.0 (debug:no, forward:no, legacy:no, es:yes)
Created EGL context[0x55fe17d80e10]
OpenGL ES version: 3.0 (core)
* GLSL version: OpenGL ES GLSL ES 3.00
* Max texture size: 16384

Enabled features (use GDK_GL_DISABLE env var to disable):
    debug: YES
    unpack-subimage: YES
    half-float: YES
    sync: YES
    base-instance: YES
    buffer-storage: not supported
Using fractional scale 1 for EGL window (800 568 => 800 568)
Destroying EGL context